MS Course Requirements

MS students must complete the following:

• Core Courses (15 credits)
• Elective Courses (9 credits)
• Research/capstone experience (12 credits)
• Graduate Seminar (non-credit)
• Winter Enrichment Program (non-credit)

Core and Elective Courses must be technical courses and cannot be substituted with Research, Internship, or Broadening Courses to fulfill degree requirements.

Core Courses (15 credits)

Core Courses provide students with the background needed to establish a solid foundation in the program area. Students must complete 15 credits (5 Core Courses) and be aware that Core Courses may be offered only once per academic year. The following Core Courses are mandatory for all four tracks.

B 241	Molecular & Cellular Biology Theory	2
B 242	Molecular & Cellular Bio Applications	4
BioE 201	Foundations of Bioengineering	3
BioE 202	Foundations of Synthetic Biology	3
BioE 230	Foundations of Bioengineering Lab	3

Elective Courses (9 credits)

Elective Courses allow students to tailor their educational experience to meet individual research and educational objectives with the permission of the Academic Advisor.

Track 1: Biodevices and Biomaterials

B 316	Foundations in Bioimaging	3
BioE 326	Biosensing Materials	3
ECE 202	Analog Integrated Circuits	3
ECE 205	Introduction to MEMS	3
ECE 208	Semiconductor Optoelectronic Devices	3
ECE 304	Integrated Microsystems	3
ECE 310	Integrated Sensors	3
ME 222A	Mechatronics and Microsystems	3
ME 222B	Mechatronics and Intelligent Systems	3
MSE 201	Fundamentals of Materials Science and Engineering	3
MSE 228	Materials Characterization	3
MSE 318	Nanomaterials	3
BESE 300	Fundamental Skills in Bioinformatics	3
STAT 210	Applied Statistics and Data Analysis	3
EnSE 202	Aquatic Chemistry	3
Chem 210	Material Chemistry I	3
Chem 215	Polymers and Polymerization Processes	3
Chem 360	Advanced Physical Chemistry I	3

Track 2: Synthetic Biology

B 204	Genomics	3
B 317	Advanced Environmental Microbiology	3
BioE 300	Microbial Engineering and Bioprocess Design	3
BioE 306	Synthetic Biology and Biotechnology	3
EnSE 314	Public Health Microbiology	3
EnSE 341	Processes in Environmental Biotechnology	3
PS 302	Biochemistry and Metabolic Engineering	3
BESE 300	Fundamental Skills in Bioinformatics	3
CS 210	Introduction to Statistics and Bio-Statistics	3

Track 3: Bioinformatics and Machine Learning

AMCS 300	Modelling and Simulation of Biosystems	3
AMCS 343	Fast Solvers for Large Systems of Equations	3
B 300	Advances in Microbiome Sciences	3
B 204	Genomics	3
CS 201	Introduction to Programming with Python	3
CS 210	Introduction to Statistics and Bio-Statistics	3
CS 220	Data Analytics	3
CS 229	Machine Learning	3
CS 249	Algorithms in Bioinformatics	3
CS 260	Design and Analysis of Algorithms	3
CS 294 W	Contemporary Topics in Computer Science	3
STAT 210	Applied Statistics and Data Analysis	3
STAT 220	Probability and Statistics	3
BESE 300	Fundamental Skills in Bioinformatics	3
BESE 302	AI 4 Life Sciences and Medicine	3

Graduate Seminars (non-credit)

All students must register for BioE 398 and receive a Satisfactory grade for two  Semesters. For more details about Graduate Seminars please contact your GPSA.

Winter Enrichment Program (non-credit)

All students must complete the Winter Enrichment Program (WE 100) for credit at least once during their studies at KAUST. Students who have previously completed WEP will be exempt from this requirement in their future studies. 

MS Thesis

Students pursuing the thesis option must complete a minimum of 12 credits of Thesis Research (BioE 297).

Thesis Application

Students must complete the application and have it approved by the Program Chair no later than the end of week one of their third Semester. The Thesis Advisor must be a full-time program-affiliated Assistant, Associate, or Full Professor at KAUST. The Thesis Advisor can only become project affiliated for the specific thesis project with the Program Chair’s approval. The application must include a Thesis Proposal endorsed by the Thesis Advisor and a timeline for completion.

MS Thesis students who meet the graduation requirements of the non-thesis track may drop the thesis up until the end of their third Semester. Students not able to complete their thesis after this deadline will face academic dismissal.

Petition to Defend Thesis

Students must submit a petition to defend their thesis by the deadline published in the Academic Calendar. Students are responsible for scheduling the Thesis Defense Date. All committee members must attend the Defense. Students must defend their thesis and obtain the final approval of the Defense within their duration of study (4 Semesters).

Thesis Committee Formation

The MS thesis defense committee must include a minimum of three members and may have up to four members. The composition of the committee is outlined as follows: 

Member	Role	Program Status
1	Chair	Primary or alternative affiliation within of the student’s program
2	Faculty	Primary or alternative affiliation within of the student’s program
3	Faculty	Primary or alternative affiliation outside of the student’s program
4	Faculty or Research Scientist	Affiliation within or outside of KAUST

Notes:

• The committee must be approved by the Dean. 
• Members 1-3 are mandatory, while member 4 is optional. 
• The student’s advisor serves as the chair of the committee and must use the affiliation within the student’s program. 
• Either member 1 or member 2 must have primary affiliation within the student’s program.
• The student’s co-advisor may serve as member 4. 
• Professors of Practice and Research Professors may serve as members 1-4, depending on their affiliation and whether they are the student’s advisor or co-advisor. 
• Adjunct Professors and Professors Emeriti may continue serving on committees in the roles they had at the time of their departure but are not permitted to serve on new committees.
• Visiting Professors may only serve as member 4. 
• Once approved, any changes to the committee require the approval of both the student's advisor and the Dean.
  
   

View a list of Faculty and their affiliations here.

Thesis Defense Results

The format of the Oral Defense is left to the discretion of the Thesis Committee. At the end of the Final Defense, students will be evaluated with one of the following outcomes:

• Pass: The Committee agrees with no more than one dissenting vote. The Thesis must be archived within two weeks of the defense, and the student must send the Thesis Result Form to the GPSA within two days of the defense.
• Pass with Conditions: All committee members must agree on the required conditions. If they cannot agree, the Dean will make the final decision. The student has up to three months to meet these conditions, unless the Committee unanimously agrees to change the deadline.
• Fail with Retake: If conditions cannot be met within three months, or more than one member casts a negative vote, one retake of the defense is allowed. The retake must occur within six months of the original defense unless the Committee unanimously agrees to a shorter timeline. If the student fails the retake, they will be dismissed from the University. The Committee Chair must immediately inform the GPSA to initiate the necessary actions.
• Fail Without Retake: The decision must be unanimous, resulting in the student’s dismissal from the University. The Committee Chair must inform the GPSA immediately to take the necessary actions. 

Additional Guidelines:

• Students who have exceeded their duration of study must apply for an extension as per the Time Limit and Extension Policy. All conditions must be fulfilled by the end of the extension period, which takes precedence over the Committee’s set deadlines.
• The outcome of the Thesis Defense must be recorded by submitting the Thesis Defense Evaluation Form to the Office of the Registrar within two days of the defense.
• Additionally, students must submit the Defense Results Form by the deadline published in the Academic Calendar.
• The required forms are available on the webpage webpage of the Office of the Registrar.  

Thesis Document

Students must follow the Thesis and Dissertation Guidelines available on the KAUST Library webpage when they write their Thesis. Once the Thesis is ready to be examined, students must determine the Defense date with the agreement of all members of the Thesis Committee.

Thesis Archiving

Students must archive the Thesis in the KAUST Library two weeks from the defense date. This must not exceed the duration of study or the deadline published in the Academic Calendar.

MS Non-Thesis

Students wishing to pursue the non-thesis option must complete a total of 12 capstone credits, with a minimum of 6 credits of Directed Research (any course with following code XX 299). Students must complete the remaining credits through one or a combination of the options listed below:

• Broadening Experience Courses
• Internship: Summer internship (BioE 295) – students can only take one internship.
• 300- Level Courses
• Additional Directed Research (any course with following code XX 299).